Structural and biochemical basis of FLS2-mediated signal activation and transduction in rice.

The receptor-like kinase FLAGELLIN-SENSITIVE 2 (FLS2) functions as a bacterial flagellin receptor localized on the cell membrane of plants. In Arabidopsis, the co-receptor BRI1-ASSOCIATED RECEPTOR KINASE 1 (BAK1) cooperates with FLS2 to detect the flagellin epitope flg22, resulting in formation of a signaling complex that triggers plant defense responses. However, the co-receptor responsible for recognizing and signaling the flg22 epitope in rice remains to be determined, and the precise structural mechanism underlying FLS2-mediated signal activation and transduction has not been clarified. This study presents the structural characterization of a kinase-dead mutant of the intracellular kinase domain of OsFLS2 (OsFLS2-KDD1013A) in complex with ATP or ADP, resolved at resolutions of 1.98 Å and 2.09 Å, respectively. Structural analysis revealed that OsFLS2 can adopt an active conformation in the absence of phosphorylation, although it exhibits only weak basal catalytic activity for autophosphorylation. Subsequent investigations demonstrated that OsSERK2 effectively phosphorylates OsFLS2, which reciprocally phosphorylates OsSERK2, leading to complete activation of OsSERK2 and rapid phosphorylation of the downstream substrate receptor-like cytoplasmic kinases OsRLCK176 and OsRLCK185. Through mass spectrometry experiments, we successfully identified critical autophosphorylation sites on OsSERK2, as well as sites transphosphorylated by OsFLS2. Furthermore, we demonstrated the interaction between OsSERK2 and OsFLS2, which is enhanced in the presence of flg22. Genetic evidence suggests that OsRLCK176 and OsRLCK185 may function downstream of the OsFLS2-mediated signaling pathway. Our study reveals the molecular mechanism by which OsFLS2 mediates signal transduction pathways in rice and provides a valuable example for understanding RLK-mediated signaling pathways in plants.

Effect of doping and defects on the optoelectronic properties of ZrSe2 based on the first principle.

CONTEXT: Based on the first principles under the framework of density functional theory, it calculates the effect of vacancy defects in single Zr and single Se atoms and the replacement of Se atoms in ZrSe2 with O, Se, and Te atoms on the optoelectronic properties of monolayer ZrSe2, including geometry, energy band structure, electronic density of states, and optical properties. The doping of the three non-metallic atoms was n-type doping for the O and S atoms and p-type doping for the Te atom. Defects in the Zr atoms and O-atom doping significantly affect the peak reflectance and absorption coefficient of the ZrSe2 system. METHODS: All Density Functional Theory calculations were carried out using the CASTEP module in the Materials-Studio (MS) software. The generalized gradient approximation plane-wave pseudopotential method and the Perdew-Burke-Ernzerfhof (PBE) generalized function were used for structural optimization and total energy calculation of the defect and doping systems. After convergence tests, the plane wave truncation energy was set to 500 eV, and the Brillouin zone K-point grid was set to 4 × 4 × 1. The atomic energy convergence criterion is 1.0 × 10-6 eV/atom, the interatomic interaction force convergence criterion is 0.02 eV/Å, the maximum atomic displacement convergence criterion is 0.001 Å, and the internal crystal stress convergence criterion is 0.05 GPa. In order to avoid the influence of the interaction forces between the layers, a vacuum layer of 15 Å is placed in the Z-axis direction.

Electronic and optical structural manipulation of NbS2 defects under strain: first-principles calculations.

CONTEXT: Monolayer NbS2 is a promising new two-dimensional material, and it is critical to develop effective methods to make NbS2 a material for nanodevices and photovoltaic applications. This study studied the strain rule of sulfur-deficient NbS2 structure by first principles. The results show that all defect structures introduce impurity states to enhance electron transport. The disulfide defect structure produces an indirect band gap under the action of tensile strain, which can reach up to 0.56eV and become a diluted semiconductor. The hybrid NbS2 exhibits high transparency under infrared, visible, and low-frequency ultraviolet light, improving the material's transmittance, optical response, and catalytic activity. The research results of this paper will provide a basis for the subsequent research of single-layer NbS2 and accelerate the research process of NbS2 as a new semiconductor material. METHODS: We are on the surface perpendicular to the 3×3×1 NbS2 and use a 15 Å vacuum layer to avoid interacting with periodic images. The first-principles simulation uses the CASTEP module in Materials Studio to simulate the hypothetical model and relaxation optimization structure of single-layer NbS2 under strain and defect state. The calculation function is PBE (Perdew-Burke-Ernzerhof) function under the generalized gradient approximation (GGA) for an approximate calculation to describe the interaction between electrons and the interaction between electrons and ions. The pseudopotentials of 3s23p4 and 4d45s1 valence electron configurations were used for S and Nb atoms, respectively. Van der Waals correction is considered in the simulation process. Moreover, it includes spin-orbit coupling (SOC) effects. For the plane wave truncation energy, we set it at 500eV. The arrangement of the Brillouin area is divided by 6×6×1 gamma-centered Monkhorst-Pack grids. The lattice deformation of all hybrid structures is less than 0.05 Gpa, and the interatomic force is less than 0.03 eV/Å.

Rice domestication-associated transcription factor PROSTRATE GROWTH 1 controls plant and panicle architecture by regulating the expression of LAZY 1 and OsGIGANTEA, respectively.

Plant architecture and panicle architecture are two critical agronomic traits that greatly affect the yield of rice (Oryza sativa). PROSTRATE GROWTH 1 (PROG1) encodes a key C2H2-type zinc-finger transcription factor and has pleiotropic effects on the regulation of both plant and panicle architecture, thereby influencing the grain yield. However, the molecular mechanisms through which PROG1 controls plant and panicle architecture remain unclear. In this study, we showed that PROG1 directly binds the LAZY 1 (LA1) promoter and acts as a repressor to inhibit LA1 expression. Conversely, LA1 acts as a repressor of PROG1 by directly binding to the PROG1 promoter. These two genes play antagonistic roles in shaping plant architecture by regulating both tiller angle and tiller number. Interestingly, our data showed that PROG1 controls panicle architecture through direct binding to the intragenic regulatory regions of OsGIGANTEA (OsGI) and subsequent activation of its expression. Collectively, we have identified two crucial targets of PROG1, LA1 and OsGI, shedding light on the molecular mechanisms underlying plant and panicle architecture control by PROG1. Our study provides valuable insights into the regulation of key domestication-related traits in rice and identifies potential targets for future high-yield rice breeding.

Effect of strain on the electronic and optical properties of (non-)metal adsorbed NbS2monolayer.

This paper investigated the performance changes brought about by the adsorption of metal and non-metal atoms on monolayer NbS2. First-principles found that the adsorption of non-metallic atoms on the monolayer NbS2significantly changed the surface structure, with non-metallic atoms other than F intercalated into the upper S atoms. Among them, the F atom adsorption modification system changed the metallic properties of NbS2and tended to transform into a semiconductor. Fe and Co atoms effectively change the real part of the dielectric constant, transforming NbS2into a metamaterial. The adsorption of noble metal atoms can improve the activity of the material. Furthermore, F(Fe, Co) atoms can induce p(n)-type doping by adjusting strain. N adsorption expands the system's electromagnetic wave absorption range and improves the material's electrical conductivity. O and Pt adsorption significantly enhanced the polarizability and photoresponse of the material, resulting in enhanced photocatalytic activity.

A first-principles study: single-layer TiS2 modified by non-metal doping.

In this paper, the effect of substitutional doping of boron (B), carbon (C), nitrogen (N), oxygen (O), and phosphorus (P) at the S-site on the electronic structure of the monolayer TiS2 system is investigated using a first-principles calculation method. The effect of nonmetal doping on the band gap of TiS2 and its mechanism were studied by analyzing the stability, electronic structure, and charge transfer of the system. By calculating the electron cloud overlap population and formation energy, we confirmed that the system is stable, and the Ti-X bond length of the doped system undergoes different degrees of distortion. The properties of the B, C, and N doped system show different properties with different doping concentrations; the band gap of the O-atom system gradually expands with the rise of the doping rate. The hybridization positions of the impurity and the intrinsic atoms are found by comparing the DOS; combined with the charge density difference, we confirmed the interaction of impurity atoms with the system and revealed the bonding process of different systems.

The osa-miR164 target OsCUC1 functions redundantly with OsCUC3 in controlling rice meristem/organ boundary specification.

The specification of the meristem/organ boundary is critical for plant development. Here, we investigate two previously uncharacterized NAC transcription factors: the first, OsCUC1, which is negatively regulated by osa-miR164c, dimerizes with the second, OsCUC3, and functions partially redundantly in meristem/organ boundary specification in rice (Oryza sativa). We produced knockout lines for rice OsCUC1 (the homolog of Arabidopsis CUC1 and CUC2) and OsCUC3 (the homolog of Arabidopsis CUC3), as well as an overexpression line for osa-miR164c, to study the molecular mechanism of boundary specification in rice. A single mutation in either OsCUC1 or OsCUC3 leads to defects in the establishment of the meristem/organ boundary, resulting in reduced stamen numbers and the fusion of leaves and filaments, and the defects are greatly enhanced in the double mutant. Transgenic plants overexpressing osa-miR164c showed a phenotype similar to that of the OsCUC1 knockout line. In addition, knockout of OsCUC1 leads to multiple defects, including dwarf plant architecture, male sterility and twisted-rolling leaves. Further study indicated that OsCUC1 physically interacts with leaf-rolling related protein CURLED LEAF AND DWARF 1 (CLD1) and stabilizes it in the nucleus to control leaf morphology. This work demonstrated that the interplay of osa-miR164c, OsCUC1 and OsCUC3 controls boundary specification in rice.

Dual nonlinearity Controlling of Mode and Dispersion Properties in Graphene-Dielectric Plasmonic Waveguide.

We study the mode and dispersion properties of graphene-dielectric nonlinear plasmonic waveguide considering the dual nonlinearity of dielectric and graphene. For TM polarization, the mode distribution, the permittivity distribution, and dispersion relation were obtained by numerically solving the Maxwell equations. Compared with the case considering only the nonlinearity of dielectric, the initial field intensity to excite plasmon modes reduces obviously when introducing the dual nonlinearity. In addition, the influence of dual nonlinearity on dispersion relation is discussed, and we find that the graphene's nonlinearity affects strongly the dispersion properties. The introduction of dual nonlinearity leads to the decrease of the initial field intensity, which has potential application in all-optical switches with low threshold.